HL_6TC3_056
3D structure
- PDB id
- 6TC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- U(1MG)(PSU)(5MU)GAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 6TC3|1|23S1|A|751, 6TC3|1|23S1|A|752
- QA status
- Modified nucleotides: 1MG, PSU, 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TC3_056 not in the Motif Atlas
- Homologous match to HL_5J7L_155
- Geometric discrepancy: 0.0621
- The information below is about HL_5J7L_155
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
6TC3|1|23S1|U|744
6TC3|1|23S1|1MG|745
6TC3|1|23S1|PSU|746
6TC3|1|23S1|5MU|747
6TC3|1|23S1|G|748
6TC3|1|23S1|A|749
6TC3|1|23S1|A|750
6TC3|1|23S1|A|751
6TC3|1|23S1|A|752
6TC3|1|23S1|A|753
Current chains
- Chain 23S1
- 23S rRNA
Nearby chains
- Chain L031
- 50S ribosomal protein L3
- Chain L221
- 50S ribosomal protein L22
- Chain L321
- 50S ribosomal protein L32
- Chain L341
- 50S ribosomal protein L34
- Chain SPE1
- SpeFL
Coloring options: