HL_6TC3_063

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_063 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.259

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

6TC3|1|23S1|C|1092
6TC3|1|23S1|G|1093
6TC3|1|23S1|U|1094
6TC3|1|23S1|A|1095
6TC3|1|23S1|A|1096
6TC3|1|23S1|U|1097
6TC3|1|23S1|A|1098
6TC3|1|23S1|G|1099

Current chains

Chain 23S1

23S rRNA

Nearby chains