HL_6U48_005

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1811

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6U48|1|CA|U|158
6U48|1|CA|G|159
6U48|1|CA|A|160
6U48|1|CA|A|161
6U48|1|CA|U|162
6U48|1|CA|C|163
6U48|1|CA|C|164
6U48|1|CA|A|165
6U48|1|CA|U|166
6U48|1|CA|A|167
6U48|1|CA|G|168

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CY

50S ribosomal protein bL28