HL_6U48_012

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6U48|1|CA|G|386, 6U48|1|CA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1476

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6U48|1|CA|A|382
6U48|1|CA|C|383
6U48|1|CA|A|384
6U48|1|CA|C|385
6U48|1|CA|G|386
6U48|1|CA|U|387
6U48|1|CA|G|388
6U48|1|CA|G|389
6U48|1|CA|U|390
6U48|1|CA|A|391
6U48|1|CA|U|392

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CY

50S ribosomal protein bL28