HL_6U48_045

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

6U48|1|CA|A|1780, 6U48|1|CA|U|1781, 6U48|1|CA|U|1782, 6U48|1|CA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_045 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1038

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6U48|1|CA|U|1777
6U48|1|CA|U|1778
6U48|1|CA|U|1779
6U48|1|CA|A|1780
6U48|1|CA|U|1781
6U48|1|CA|U|1782
6U48|1|CA|A|1783
6U48|1|CA|A|1784
6U48|1|CA|A|1785
6U48|1|CA|A|1786
6U48|1|CA|A|1787

Current chains

Chain CA

23S rRNA

Nearby chains

Chain A

phazolicin

Chain C3

50S ribosomal protein bL34

Chain CC

50S ribosomal protein uL2