HL_6V3D_042

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

ACUCGCU

Length

7 nucleotides

Bulged bases

6V3D|1|AN1|U|1725, 6V3D|1|AN1|C|1728

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3D_042 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3621

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

6V3D|1|AN1|A|1723
6V3D|1|AN1|C|1724
6V3D|1|AN1|U|1725
6V3D|1|AN1|C|1726
6V3D|1|AN1|G|1727
6V3D|1|AN1|C|1728
6V3D|1|AN1|U|1729

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains