HL_6VWN_016
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6VWN|1|1|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWN_016 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.1515
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6VWN|1|1|G|786
6VWN|1|1|A|787
6VWN|1|1|U|788
6VWN|1|1|U|789
6VWN|1|1|A|790
6VWN|1|1|G|791
6VWN|1|1|A|792
6VWN|1|1|U|793
6VWN|1|1|A|794
6VWN|1|1|C|795
6VWN|1|1|C|796
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- HIV ribosomal frameshift signal
- Chain 5
- Transfer RNA; tRNA
- Chain j
- 30S ribosomal protein S11
- Chain t
- 30S ribosomal protein S21
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