HL_6VWN_041

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6VWN|1|2|G|386, 6VWN|1|2|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_041 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.3039

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6VWN|1|2|A|382
6VWN|1|2|C|383
6VWN|1|2|A|384
6VWN|1|2|C|385
6VWN|1|2|G|386
6VWN|1|2|U|387
6VWN|1|2|G|388
6VWN|1|2|G|389
6VWN|1|2|U|390
6VWN|1|2|A|391
6VWN|1|2|U|392

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AB

50S ribosomal protein L35

Chain V

50S ribosomal protein L28