HL_6VWN_045

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

6VWN|1|2|G|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_045 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.387

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6VWN|1|2|G|543
6VWN|1|2|C|544
6VWN|1|2|U|545
6VWN|1|2|U|546
6VWN|1|2|A|547
6VWN|1|2|G|548
6VWN|1|2|G|549
6VWN|1|2|C|550

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain P

50S ribosomal protein L21