HL_6VWN_100

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

6VWN|1|5|C|17, 6VWN|1|5|G|18, 6VWN|1|5|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_100 not in the Motif Atlas

Homologous match to HL_1N78_001

Geometric discrepancy: 0.4982

The information below is about HL_1N78_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6VWN|1|5|C|13
6VWN|1|5|A|14
6VWN|1|5|G|15
6VWN|1|5|U|16
6VWN|1|5|C|17
6VWN|1|5|G|18
6VWN|1|5|G|19
6VWN|1|5|U|20
6VWN|1|5|A|21
6VWN|1|5|G|22

Current chains

Chain 5

tRNAPhe

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA