HL_6VYU_042

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYU_042 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1068

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6VYU|1|a|U|158
6VYU|1|a|G|159
6VYU|1|a|A|160
6VYU|1|a|A|161
6VYU|1|a|U|162
6VYU|1|a|C|163
6VYU|1|a|C|164
6VYU|1|a|A|165
6VYU|1|a|U|166
6VYU|1|a|A|167
6VYU|1|a|G|168

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28