HL_6VYW_042

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYW_042 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1068

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6VYW|1|a|U|158
6VYW|1|a|G|159
6VYW|1|a|A|160
6VYW|1|a|A|161
6VYW|1|a|U|162
6VYW|1|a|C|163
6VYW|1|a|C|164
6VYW|1|a|A|165
6VYW|1|a|U|166
6VYW|1|a|A|167
6VYW|1|a|G|168

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28