HL_6VYX_103

3D structure

PDB id

6VYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CCUUUAAGG

Length

9 nucleotides

Bulged bases

6VYX|1|a|U|2797, 6VYX|1|a|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYX_103 not in the Motif Atlas

Geometric match to HL_5TBW_015

Geometric discrepancy: 0.3279

The information below is about HL_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6VYX|1|a|C|2794
6VYX|1|a|C|2795
6VYX|1|a|U|2796
6VYX|1|a|U|2797
6VYX|1|a|U|2798
6VYX|1|a|A|2799
6VYX|1|a|A|2800
6VYX|1|a|G|2801
6VYX|1|a|G|2802

Current chains

Chain a

23S rRNA

Nearby chains