HL_6VYY_103

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CCUUUAAGG

Length

9 nucleotides

Bulged bases

6VYY|1|a|U|2797, 6VYY|1|a|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYY_103 not in the Motif Atlas

Geometric match to HL_5TBW_015

Geometric discrepancy: 0.328

The information below is about HL_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6VYY|1|a|C|2794
6VYY|1|a|C|2795
6VYY|1|a|U|2796
6VYY|1|a|U|2797
6VYY|1|a|U|2798
6VYY|1|a|A|2799
6VYY|1|a|A|2800
6VYY|1|a|G|2801
6VYY|1|a|G|2802

Current chains

Chain a

23S rRNA

Nearby chains