3D structure

PDB id
6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
UGAAUCCAUAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VZ3_042 not in the Motif Atlas
Homologous match to HL_5J7L_138
Geometric discrepancy: 0.1068
The information below is about HL_5J7L_138
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_68257.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6VZ3|1|a|U|158
6VZ3|1|a|G|159
6VZ3|1|a|A|160
6VZ3|1|a|A|161
6VZ3|1|a|U|162
6VZ3|1|a|C|163
6VZ3|1|a|C|164
6VZ3|1|a|A|165
6VZ3|1|a|U|166
6VZ3|1|a|A|167
6VZ3|1|a|G|168

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L28

Coloring options:


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