HL_6VZ5_104

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCUUUAAGG

Length

9 nucleotides

Bulged bases

6VZ5|1|a|U|2797, 6VZ5|1|a|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZ5_104 not in the Motif Atlas

Geometric match to HL_5TBW_015

Geometric discrepancy: 0.328

The information below is about HL_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6VZ5|1|a|C|2794
6VZ5|1|a|C|2795
6VZ5|1|a|U|2796
6VZ5|1|a|U|2797
6VZ5|1|a|U|2798
6VZ5|1|a|A|2799
6VZ5|1|a|A|2800
6VZ5|1|a|G|2801
6VZ5|1|a|G|2802

Current chains

Chain a

23S rRNA

Nearby chains