HL_6W2T_011

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

6W2T|1|a|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W2T_011 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.2369

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6W2T|1|a|G|288
6W2T|1|a|G|289
6W2T|1|a|U|290
6W2T|1|a|G|291
6W2T|1|a|A|292
6W2T|1|a|C|293
6W2T|1|a|U|294
6W2T|1|a|C|295

Current chains

Chain a

18S rRNA

Nearby chains

Chain F

eS4

Chain H

eS6

Chain M

uS17