HL_6W6L_059

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6W6L|1|t|U|3773

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_059 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.104

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6W6L|1|t|U|3767
6W6L|1|t|C|3768
6W6L|1|t|U|3769
6W6L|1|t|A|3770
6W6L|1|t|A|3771
6W6L|1|t|U|3772
6W6L|1|t|U|3773
6W6L|1|t|A|3774
6W6L|1|t|G|3775

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L23