HL_6W6L_064

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6W6L|1|t|A|4176, 6W6L|1|t|C|4183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_064 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.128

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6W6L|1|t|U|4172
6W6L|1|t|C|4173
6W6L|1|t|A|4174
6W6L|1|t|A|4175
6W6L|1|t|A|4176
6W6L|1|t|C|4177
6W6L|1|t|G|4178
6W6L|1|t|G|4179
6W6L|1|t|U|4180
6W6L|1|t|A|4181
6W6L|1|t|A|4182
6W6L|1|t|C|4183
6W6L|1|t|G|4184

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L10

Chain U

60S ribosomal protein L21

Chain c

60S ribosomal protein L29