HL_6W6L_071

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6W6L|1|t|G|4437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_071 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.151

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6W6L|1|t|A|4436
6W6L|1|t|G|4437
6W6L|1|t|C|4438
6W6L|1|t|A|4439
6W6L|1|t|G|4440
6W6L|1|t|A|4441
6W6L|1|t|A|4442
6W6L|1|t|U|4443

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L9