HL_6W6L_081

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

6W6L|1|u|C|17, 6W6L|1|u|G|18, 6W6L|1|u|G|19

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_081 not in the Motif Atlas

Geometric match to HL_1N78_001

Geometric discrepancy: 0.39

The information below is about HL_1N78_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6W6L|1|u|C|13
6W6L|1|u|A|14
6W6L|1|u|G|15
6W6L|1|u|U|16
6W6L|1|u|C|17
6W6L|1|u|G|18
6W6L|1|u|G|19
6W6L|1|u|U|20
6W6L|1|u|A|21
6W6L|1|u|G|22

Current chains

Chain u

tRNA

Nearby chains

Chain L

60S ribosomal protein L11

Chain t

Large subunit ribosomal RNA; LSU rRNA