HL_6W6P_013

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACACGAGAAAU

Length

11 nucleotides

Bulged bases

6W6P|1|A|G|426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6P_013 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1395

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6W6P|1|A|A|422
6W6P|1|A|C|423
6W6P|1|A|A|424
6W6P|1|A|C|425
6W6P|1|A|G|426
6W6P|1|A|A|427
6W6P|1|A|G|428
6W6P|1|A|A|429
6W6P|1|A|A|430
6W6P|1|A|A|431
6W6P|1|A|U|432

Current chains

Chain A

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L28