HL_6W6P_082

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAGUAACUGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6P_082 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3707

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6W6P|1|a|U|477
6W6P|1|a|A|478
6W6P|1|a|G|479
6W6P|1|a|U|480
6W6P|1|a|A|481
6W6P|1|a|A|482
6W6P|1|a|C|483
6W6P|1|a|U|484
6W6P|1|a|G|485
6W6P|1|a|A|486

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16