3D structure

PDB id
6WD3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
6WD3|1|3|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WD3_087 not in the Motif Atlas
Homologous match to HL_4LFB_017
Geometric discrepancy: 0.1596
The information below is about HL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

6WD3|1|3|G|786
6WD3|1|3|A|787
6WD3|1|3|U|788
6WD3|1|3|U|789
6WD3|1|3|A|790
6WD3|1|3|G|791
6WD3|1|3|A|792
6WD3|1|3|U|793
6WD3|1|3|A|794
6WD3|1|3|C|795
6WD3|1|3|C|796

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain 4
mRNA
Chain 5
Transfer RNA; tRNA
Chain 6
Transfer RNA; tRNA
Chain P
30S ribosomal protein S11
Chain Z
30S ribosomal protein S21

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