HL_6WDB_102

3D structure

PDB id

6WDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6WDB|1|5|G|18, 6WDB|1|5|G|19, 6WDB|1|5|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDB_102 not in the Motif Atlas

Homologous match to HL_6CFJ_106

Geometric discrepancy: 0.2143

The information below is about HL_6CFJ_106

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6WDB|1|5|C|13
6WDB|1|5|A|14
6WDB|1|5|G|15
6WDB|1|5|C|16
6WDB|1|5|C|17
6WDB|1|5|U|17|||A
6WDB|1|5|G|18
6WDB|1|5|G|19
6WDB|1|5|U|20
6WDB|1|5|A|21
6WDB|1|5|G|22

Current chains

Chain 5

tRNAfMet

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 6

Transfer RNA; tRNA

Chain C

50S ribosomal protein L33