HL_6WDC_111

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

6WDC|1|1|U|162

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDC_111 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2719

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6WDC|1|1|U|158
6WDC|1|1|G|159
6WDC|1|1|A|160
6WDC|1|1|A|161
6WDC|1|1|U|162
6WDC|1|1|C|163
6WDC|1|1|C|164
6WDC|1|1|A|165
6WDC|1|1|U|166
6WDC|1|1|A|167
6WDC|1|1|G|168

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28