HL_6WNT_005

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_005 not in the Motif Atlas

Geometric match to HL_5J7L_138

Geometric discrepancy: 0.2614

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6WNT|1|4|U|158
6WNT|1|4|G|159
6WNT|1|4|A|160
6WNT|1|4|A|161
6WNT|1|4|U|162
6WNT|1|4|C|163
6WNT|1|4|C|164
6WNT|1|4|A|165
6WNT|1|4|U|166
6WNT|1|4|A|167
6WNT|1|4|G|168

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain x

50S ribosomal protein L28