HL_6WOO_006

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6WOO|1|2|U|248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.104

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6WOO|1|2|G|242
6WOO|1|2|A|243
6WOO|1|2|U|244
6WOO|1|2|G|245
6WOO|1|2|A|246
6WOO|1|2|U|247
6WOO|1|2|U|248
6WOO|1|2|C|249

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain GG

eS6

Chain LL

uS17