3D structure

PDB id
6WOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GAUGAUUC
Length
8 nucleotides
Bulged bases
6WOO|1|2|U|248
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WOO_006 not in the Motif Atlas
Homologous match to HL_4V88_191
Geometric discrepancy: 0.104
The information below is about HL_4V88_191
Detailed Annotation
T-loop with 1 bulged base
Broad Annotation
T-loop
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

6WOO|1|2|G|242
6WOO|1|2|A|243
6WOO|1|2|U|244
6WOO|1|2|G|245
6WOO|1|2|A|246
6WOO|1|2|U|247
6WOO|1|2|U|248
6WOO|1|2|C|249

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain EE
eS4
Chain GG
eS6
Chain LL
uS17

Coloring options:


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