HL_6WOO_008

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

6WOO|1|2|G|336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_008 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.0834

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6WOO|1|2|G|329
6WOO|1|2|A|330
6WOO|1|2|U|331
6WOO|1|2|A|332
6WOO|1|2|G|333
6WOO|1|2|U|334
6WOO|1|2|G|335
6WOO|1|2|G|336
6WOO|1|2|C|337

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain II

eS8

Chain LL

uS17