HL_6WOO_020

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

6WOO|1|2|U|833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_020 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.3679

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6WOO|1|2|A|829
6WOO|1|2|U|830
6WOO|1|2|U|831
6WOO|1|2|U|832
6WOO|1|2|U|833
6WOO|1|2|G|834
6WOO|1|2|U|835
6WOO|1|2|U|836
6WOO|1|2|G|837
6WOO|1|2|G|838
6WOO|1|2|U|839
6WOO|1|2|U|840
6WOO|1|2|U|841
6WOO|1|2|C|842
6WOO|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain LL

uS17