HL_6WOO_023
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6WOO|1|2|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WOO_023 not in the Motif Atlas
- Geometric match to HL_4LFB_017
- Geometric discrepancy: 0.1578
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6WOO|1|2|G|997
6WOO|1|2|A|998
6WOO|1|2|U|999
6WOO|1|2|C|1000
6WOO|1|2|A|1001
6WOO|1|2|G|1002
6WOO|1|2|A|1003
6WOO|1|2|U|1004
6WOO|1|2|A|1005
6WOO|1|2|C|1006
6WOO|1|2|C|1007
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain 4
- mRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain OO
- uS11
- Chain aa
- eS26
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