HL_6WOO_027
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 6WOO|1|2|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WOO_027 not in the Motif Atlas
- Homologous match to HL_4V88_212
- Geometric discrepancy: 0.1135
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6WOO|1|2|G|1188
6WOO|1|2|A|1189
6WOO|1|2|C|1190
6WOO|1|2|U|1191
6WOO|1|2|C|1192
6WOO|1|2|A|1193
6WOO|1|2|A|1194
6WOO|1|2|C|1195
6WOO|1|2|A|1196
6WOO|1|2|C|1197
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain QQ
- uS19
- Chain UU
- uS10
- Chain dd
- uS14
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