HL_6WOO_028

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6WOO|1|2|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_028 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.283

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6WOO|1|2|A|1238
6WOO|1|2|U|1239
6WOO|1|2|U|1240
6WOO|1|2|G|1241
6WOO|1|2|A|1242
6WOO|1|2|G|1243
6WOO|1|2|A|1244
6WOO|1|2|G|1245
6WOO|1|2|C|1246
6WOO|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain PP

uS19

Chain dd

uS14

Chain ff

eS31