HL_6WOO_055
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGUAAAAC
- Length
- 9 nucleotides
- Bulged bases
- 6WOO|1|5|U|689, 6WOO|1|5|A|691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WOO_055 not in the Motif Atlas
- Homologous match to HL_8C3A_015
- Geometric discrepancy: 0.1048
- The information below is about HL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6WOO|1|5|G|686
6WOO|1|5|U|687
6WOO|1|5|G|688
6WOO|1|5|U|689
6WOO|1|5|A|690
6WOO|1|5|A|691
6WOO|1|5|A|692
6WOO|1|5|A|693
6WOO|1|5|C|694
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- uL4
- Chain L
- eL13
- Chain N
- eL15
- Chain Y
- uL24
Coloring options: