HL_6WOO_060

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6WOO|1|5|U|879, 6WOO|1|5|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_060 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0804

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6WOO|1|5|A|876
6WOO|1|5|C|877
6WOO|1|5|G|878
6WOO|1|5|U|879
6WOO|1|5|G|880
6WOO|1|5|C|881
6WOO|1|5|A|882
6WOO|1|5|A|883
6WOO|1|5|A|884
6WOO|1|5|U|885

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain j

eL37