HL_6WOO_061

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6WOO|1|5|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_061 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1122

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6WOO|1|5|G|910
6WOO|1|5|C|911
6WOO|1|5|G|912
6WOO|1|5|A|913
6WOO|1|5|A|914
6WOO|1|5|A|915
6WOO|1|5|G|916
6WOO|1|5|A|917
6WOO|1|5|C|918

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

uL2

Chain N

eL15

Chain j

eL37