HL_6WOO_064

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6WOO|1|5|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_064 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1927

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6WOO|1|5|C|1076
6WOO|1|5|U|1077
6WOO|1|5|U|1078
6WOO|1|5|A|1079
6WOO|1|5|A|1080
6WOO|1|5|U|1081
6WOO|1|5|U|1082
6WOO|1|5|G|1083

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain D

uL18

Chain T

eL21

Chain b

eL29