HL_6WOO_081
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 6WOO|1|5|C|1846, 6WOO|1|5|G|1848, 6WOO|1|5|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WOO_081 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.0651
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6WOO|1|5|C|1844
6WOO|1|5|G|1845
6WOO|1|5|C|1846
6WOO|1|5|A|1847
6WOO|1|5|G|1848
6WOO|1|5|C|1849
6WOO|1|5|A|1850
6WOO|1|5|G|1851
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain P
- uL22
- Chain j
- eL37
- Chain l
- eL39
Coloring options: