HL_6WOO_085

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

6WOO|1|5|A|2138, 6WOO|1|5|A|2139, 6WOO|1|5|U|2140, 6WOO|1|5|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_085 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.0724

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6WOO|1|5|U|2135
6WOO|1|5|C|2136
6WOO|1|5|U|2137
6WOO|1|5|A|2138
6WOO|1|5|A|2139
6WOO|1|5|U|2140
6WOO|1|5|U|2141
6WOO|1|5|A|2142
6WOO|1|5|A|2143
6WOO|1|5|A|2144
6WOO|1|5|A|2145

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

uL2

Chain j

eL37