HL_6WOO_088
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 6WOO|1|5|U|2258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WOO_088 not in the Motif Atlas
- Geometric match to HL_2Y9H_005
- Geometric discrepancy: 0.3167
- The information below is about HL_2Y9H_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86870.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6WOO|1|5|G|2253
6WOO|1|5|U|2254
6WOO|1|5|A|2255
6WOO|1|5|A|2256
6WOO|1|5|C|2257
6WOO|1|5|U|2258
6WOO|1|5|A|2259
6WOO|1|5|U|2260
6WOO|1|5|G|2261
6WOO|1|5|A|2262
6WOO|1|5|C|2263
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 1
- eIF5B
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: