HL_6WOO_114
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6WOO|1|8|C|84, 6WOO|1|8|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WOO_114 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.3555
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6WOO|1|8|U|69
6WOO|1|8|G|70
6WOO|1|8|A|71
6WOO|1|8|A|72
6WOO|1|8|U|73
6WOO|1|8|U|74
6WOO|1|8|G|75
6WOO|1|8|C|76
6WOO|1|8|A|77
6WOO|1|8|G|78
6WOO|1|8|A|79
6WOO|1|8|A|80
6WOO|1|8|U|81
6WOO|1|8|U|82
6WOO|1|8|C|83
6WOO|1|8|C|84
6WOO|1|8|G|85
6WOO|1|8|U|86
6WOO|1|8|G|87
6WOO|1|8|A|88
6WOO|1|8|A|89
Current chains
- Chain 8
- 5.8S ribosomal rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- uL24
- Chain h
- uL29
- Chain j
- eL37
- Chain l
- eL39
Coloring options: