HL_6WOO_123

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

6WOO|1|5|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_123 not in the Motif Atlas

Homologous match to HL_8CRE_036

Geometric discrepancy: 0.1422

The information below is about HL_8CRE_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6WOO|1|5|G|1680
6WOO|1|5|U|1681
6WOO|1|5|U|1682
6WOO|1|5|A|1683
6WOO|1|5|U|1684
6WOO|1|5|C|1685
6WOO|1|5|U|1686
6WOO|1|5|U|1687
6WOO|1|5|U|1688

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain R

eL19

Chain U

eL22