HL_6X7K_005
3D structure
- PDB id
- 6X7K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGCUCAUAACCC
- Length
- 13 nucleotides
- Bulged bases
- 6X7K|1|B|A|37
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6X7K_005 not in the Motif Atlas
- Homologous match to HL_7OSM_128
- Geometric discrepancy: 0.5735
- The information below is about HL_7OSM_128
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25222.2
- Basepair signature
- cWW-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6X7K|1|B|G|29
6X7K|1|B|G|30
6X7K|1|B|G|31
6X7K|1|B|C|32
6X7K|1|B|U|33
6X7K|1|B|C|34
6X7K|1|B|A|35
6X7K|1|B|U|36
6X7K|1|B|A|37
6X7K|1|B|A|38
6X7K|1|B|C|39
6X7K|1|B|C|40
6X7K|1|B|C|41
Current chains
- Chain B
- E-site and P-site tRNA (fMet)
Nearby chains
- Chain 7
- mRNA with 24 nt long spacer
- Chain A
- Transfer RNA; tRNA
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain O
- 30S ribosomal protein S9
Coloring options: