HL_6XA1_027

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_027 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.3609

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6XA1|1|L5|C|1803
6XA1|1|L5|U|1804
6XA1|1|L5|G|1805
6XA1|1|L5|G|1806
6XA1|1|L5|C|1807
6XA1|1|L5|G|1808
6XA1|1|L5|U|1809
6XA1|1|L5|G|1810

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29