HL_6XA1_044

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

6XA1|1|L5|C|2781, 6XA1|1|L5|G|2783, 6XA1|1|L5|A|2785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_044 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.1131

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6XA1|1|L5|C|2779
6XA1|1|L5|G|2780
6XA1|1|L5|C|2781
6XA1|1|L5|A|2782
6XA1|1|L5|G|2783
6XA1|1|L5|C|2784
6XA1|1|L5|A|2785
6XA1|1|L5|G|2786

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39

Chain NC

Stalled Nascent chain