HL_6XA1_049

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(PSU)UUAAUUAAAAC

Length

13 nucleotides

Bulged bases

6XA1|1|L5|A|3621, 6XA1|1|L5|A|3622, 6XA1|1|L5|U|3623, 6XA1|1|L5|A|3627

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_049 not in the Motif Atlas

Geometric match to HL_7A0S_045

Geometric discrepancy: 0.3097

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6XA1|1|L5|G|3617
6XA1|1|L5|PSU|3618
6XA1|1|L5|U|3619
6XA1|1|L5|U|3620
6XA1|1|L5|A|3621
6XA1|1|L5|A|3622
6XA1|1|L5|U|3623
6XA1|1|L5|U|3624
6XA1|1|L5|A|3625
6XA1|1|L5|A|3626
6XA1|1|L5|A|3627
6XA1|1|L5|A|3628
6XA1|1|L5|C|3629

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lj

60S ribosomal protein L37

Chain NC

Stalled Nascent chain