HL_6XA1_117
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- (PSU)UUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 6XA1|1|L5|A|3621, 6XA1|1|L5|A|3622, 6XA1|1|L5|U|3623, 6XA1|1|L5|A|3627
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XA1_117 not in the Motif Atlas
- Homologous match to HL_8P9A_157
- Geometric discrepancy: 0.2221
- The information below is about HL_8P9A_157
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6XA1|1|L5|PSU|3618
6XA1|1|L5|U|3619
6XA1|1|L5|U|3620
6XA1|1|L5|A|3621
6XA1|1|L5|A|3622
6XA1|1|L5|U|3623
6XA1|1|L5|U|3624
6XA1|1|L5|A|3625
6XA1|1|L5|A|3626
6XA1|1|L5|A|3627
6XA1|1|L5|A|3628
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Lj
- 60S ribosomal protein L37
- Chain NC
- Stalled Nascent chain
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