HL_6XA1_121

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGGUGAAAU(PSU)

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XA1_121 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.2229

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6XA1|1|S2|A|957
6XA1|1|S2|G|958
6XA1|1|S2|G|959
6XA1|1|S2|U|960
6XA1|1|S2|G|961
6XA1|1|S2|A|962
6XA1|1|S2|A|963
6XA1|1|S2|A|964
6XA1|1|S2|U|965
6XA1|1|S2|PSU|966

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SO

40S ribosomal protein S14

Chain k

mRNA