HL_6XIQ_056
3D structure
- PDB id
- 6XIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 6XIQ|1|1|A|2637, 6XIQ|1|1|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XIQ_056 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.4559
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
6XIQ|1|1|U|2633
6XIQ|1|1|U|2634
6XIQ|1|1|A|2635
6XIQ|1|1|A|2636
6XIQ|1|1|A|2637
6XIQ|1|1|C|2638
6XIQ|1|1|G|2639
6XIQ|1|1|A|2640
6XIQ|1|1|U|2641
6XIQ|1|1|A|2642
6XIQ|1|1|A|2643
6XIQ|1|1|C|2644
6XIQ|1|1|G|2645
Current chains
- Chain 1
- 35S ribosomal RNA
Nearby chains
- Chain I
- RPL10 isoform 1
- Chain T
- 60S ribosomal protein L21-A
- Chain b
- RPL29 isoform 1
Coloring options: