HL_6XIQ_101

3D structure

PDB id

6XIQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6XIQ|1|2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XIQ_101 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.3385

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6XIQ|1|2|C|1309
6XIQ|1|2|U|1310
6XIQ|1|2|U|1311
6XIQ|1|2|A|1312
6XIQ|1|2|A|1313
6XIQ|1|2|U|1314
6XIQ|1|2|U|1315
6XIQ|1|2|G|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S17-B